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SNOW DROP: Southern-DNA, Northern-RNA, Western-Protein
Picture This (Mental Hook): Picture a scientist walking in winter: SNOW DROP! In the lab, Southern blot detects DNA fragments, Northern blot detects RNA transcripts, and Western blot detects Protein antibodies!
๐ Visual Diagram & Mental Flow:
โโโโโโโโโโโโโฌโโโโโโโโโโโโฌโโโโโโโโโโโโโโโโโโโโโโโฌโโโโโโโโโโโโโโโโโโโโโโโโโโโโโโโโโโโโโโ โ Letter โ Target โ Probe Molecule โ Clinical / Research Utility โ โโโโโโโโโโโโโผโโโโโโโโโโโโผโโโโโโโโโโโโโโโโโโโโโโโผโโโโโโโโโโโโโโโโโโโโโโโโโโโโโโโโโโโโโโค โ [S]outhernโ [D]NA โ Radioactive ssDNA โ Gene mapping, RFLP, forensics โ โ [N]orthernโ [R]NA โ Radioactive cDNA/RNA โ Gene expression, mRNA transcript sizeโ โ [O] โ [O] โ (Mental dummy spacer)โ (No technique) โ โ [W]estern โ [P]rotein โ Specific Antibody โ HIV confirmatory test, biomarker lvlโ โโโโโโโโโโโโโดโโโโโโโโโโโโดโโโโโโโโโโโโโโโโโโโโโโโดโโโโโโโโโโโโโโโโโโโโโโโโโโโโโโโโโโโโโโ
๐ The Decoded Sequence:
S - D
Southern = DNA
Edwin Southern (1975); agarose gel + nitrocellulose membrane + labeled DNA probe
N - R
Northern = RNA
Formaldehyde agarose gel + nylon membrane + probe detects transcript abundance
W - P
Western = Protein
SDS-PAGE separation + PVDF membrane + primary/secondary enzyme-linked antibody
Examiner Trap / Never Forget: Southern blot was named after its inventor, Dr. Edwin Southern (capitalized). Northern and Western blots were named as scientific wordplays and are technically not proper names!